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Table 1 List of in-house primers used for pol genome amplification and genotypic drug-resistance testing

From: Clade homogeneity and Pol gene polymorphisms in chronically HIV-1 infected antiretroviral treatment naive patients after the roll out of ART in Ethiopia

Name

Sequence

Position*

Use

HIVrt

5’TGTTTTACATCATTAGTGTG 3’

3630–3649

Pol/outer

HIVpcrFor1

5’TGATGACAGCATGTCAGGGAGTGG 3’

1826–1849

Pol/outer

HIVpcrRev1

5’GGCTCTTGATAAATTTGATATGTCCATTG3’

3555–3583

Pol/outer

HIVpcrFor2

5’AGCCAACAGCCCCACCAG 3’

2150–2167

Pol/inner

HIVpcrRev2

5’CTGTATTTCTGCTATTAAGTCTTTTG 3’

3514–3539

Pol/inner

HIVseq1

5’GTTAAACAATGGCCATTGACAGA 3’

2610–2632

Pol/inner

HIVseq2

5’TGGAAAGGATCACCAGCAATATT 3’

3006–3028

Pol/inner

HIVseq3

5’GGGCCATCCATTCCTGGCT 3’

2584–2605

Pol/inner

HIVseq4

5’CCATCCCTGTGGAAGCACATT 3’

2988–3008

Pol/inner

  1. *All positions are matched to HIV-1HXB2 (GenBank Accession number K03455).