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Table 2 Comparison of methods and calibrating the size of the phylogenetic tree

From: Superinfection with drug-resistant HIV is rare and does not contribute substantially to therapy failure in a large European cohort

  RAxML 150 0.6 MrBayes 150 0.95 RAxML 20 0.6 MrBayes 20 0.95 RAxML 250 0.6 RAxML 50 0.6 MrBayes 50 0.95
RAxML 150 0.6 72       
MrBayes 150 0.95 69 71      
RAxML 20 0.6 67 66 70     
MrBayes 20 0.95 61 62 62 63    
RAxML 250 0.6 69 67 66 59 71   
RAxML 50 0.6 69 66 65 59 67 69  
MrBayes 50 0.95 67 68 64 62 65 66 69
  1. The table shows the number of patients indicated with non-monophyletic infection using the settings of both the row and the column header of a cell, from a preliminary analysis of 170 individuals. Headers show the phylogenetic software used for tree reconstruction, the size of the tree and the support threshold used when evaluating the trees.