| |
Mock
|
Rickettsia infection day 1
|
Rickettsia infection day 3
|
---|
| |
Replicate 1
|
Replicate 2
|
Replicate 3
|
Replicate 1
|
Replicate 2
|
Replicate 3
|
Replicate 1
|
Replicate 2
|
Replicate 3
|
Total reads
|
7,976,072
|
7,579,606
|
7,072,909
|
9,086,972
|
9,303,189
|
8,233,584
|
7,000,534
|
7,478,639
|
6,813,408
|
Mouse genome
|
6,825,993
|
6,504,196
|
6,142,393
|
7,888,232
|
8,053,081
|
7,064,456
|
6,014,752
|
6,419,927
|
5,653,699
|
(GRCm38/mm10)
|
Mouse small RNAs
|
microRNA
|
4,726,255
|
4,538,273
|
4,437,811
|
5,678,975
|
5,617,614
|
4,833,244
|
4,099,680
|
4,176,360
|
2,843,170
|
piRNA
|
36,579
|
39,855
|
34,899
|
45,506
|
40,654
|
35,252
|
35,230
|
36,925
|
30,880
|
snoRNA
|
104,905
|
111,394
|
111,173
|
107,850
|
160,003
|
130,500
|
142,705
|
126,827
|
108,898
|
snRNA
|
11,381
|
12,387
|
11,513
|
11,055
|
14,467
|
12,857
|
18,941
|
19,080
|
15,470
|
rRNA
|
19,666
|
24,792
|
28,487
|
25,276
|
26,243
|
28,507
|
28,403
|
25,919
|
29,887
|
tRNA
|
388,179
|
239,575
|
150,429
|
278,754
|
457,630
|
452,977
|
337,384
|
597,214
|
700,422
|
tRNA matches
|
tRF-5
|
362,050
|
212,503
|
122,029
|
249,710
|
423,795
|
420,596
|
304,148
|
548,458
|
647,353
|
t-RF-3
|
319
|
302
|
579
|
511
|
487
|
580
|
427
|
553
|
571
|
non-tRF
|
25,810
|
26,770
|
27,821
|
28,524
|
33,384
|
31,801
|
32,809
|
48,203
|
52,498
|
- The read numbers are summarized and tabulated. Sequences matching tRNAs were further sorted into tRF-5, -3, and non-tRFs, as defined in the text. Mouse genome (GRCm38/mm10) indicates Mus musculus genome assembled by the Genome Reference Consortium (GRCm38), UCSC version 10.