Skip to main content

Table 1 Summary of high-throughput sequencing data

From: Compartmentalized, functional role of angiogenin during spotted fever group rickettsia-induced endothelial barrier dysfunction: evidence of possible mediation by host tRNA-derived small noncoding RNAs

  

Mock

Rickettsia infection day 1

Rickettsia infection day 3

  

Replicate 1

Replicate 2

Replicate 3

Replicate 1

Replicate 2

Replicate 3

Replicate 1

Replicate 2

Replicate 3

Total reads

7,976,072

7,579,606

7,072,909

9,086,972

9,303,189

8,233,584

7,000,534

7,478,639

6,813,408

Mouse genome

6,825,993

6,504,196

6,142,393

7,888,232

8,053,081

7,064,456

6,014,752

6,419,927

5,653,699

(GRCm38/mm10)

Mouse small RNAs

microRNA

4,726,255

4,538,273

4,437,811

5,678,975

5,617,614

4,833,244

4,099,680

4,176,360

2,843,170

piRNA

36,579

39,855

34,899

45,506

40,654

35,252

35,230

36,925

30,880

snoRNA

104,905

111,394

111,173

107,850

160,003

130,500

142,705

126,827

108,898

snRNA

11,381

12,387

11,513

11,055

14,467

12,857

18,941

19,080

15,470

rRNA

19,666

24,792

28,487

25,276

26,243

28,507

28,403

25,919

29,887

tRNA

388,179

239,575

150,429

278,754

457,630

452,977

337,384

597,214

700,422

tRNA matches

tRF-5

362,050

212,503

122,029

249,710

423,795

420,596

304,148

548,458

647,353

t-RF-3

319

302

579

511

487

580

427

553

571

non-tRF

25,810

26,770

27,821

28,524

33,384

31,801

32,809

48,203

52,498

  1. The read numbers are summarized and tabulated. Sequences matching tRNAs were further sorted into tRF-5, -3, and non-tRFs, as defined in the text. Mouse genome (GRCm38/mm10) indicates Mus musculus genome assembled by the Genome Reference Consortium (GRCm38), UCSC version 10.
Back to article page

BMC Infectious Diseases

ISSN: 1471-2334

Contact us