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Table 1 Summary of high-throughput sequencing data

From: Compartmentalized, functional role of angiogenin during spotted fever group rickettsia-induced endothelial barrier dysfunction: evidence of possible mediation by host tRNA-derived small noncoding RNAs

   Mock Rickettsia infection day 1 Rickettsia infection day 3
   Replicate 1 Replicate 2 Replicate 3 Replicate 1 Replicate 2 Replicate 3 Replicate 1 Replicate 2 Replicate 3
Total reads 7,976,072 7,579,606 7,072,909 9,086,972 9,303,189 8,233,584 7,000,534 7,478,639 6,813,408
Mouse genome 6,825,993 6,504,196 6,142,393 7,888,232 8,053,081 7,064,456 6,014,752 6,419,927 5,653,699
(GRCm38/mm10)
Mouse small RNAs microRNA 4,726,255 4,538,273 4,437,811 5,678,975 5,617,614 4,833,244 4,099,680 4,176,360 2,843,170
piRNA 36,579 39,855 34,899 45,506 40,654 35,252 35,230 36,925 30,880
snoRNA 104,905 111,394 111,173 107,850 160,003 130,500 142,705 126,827 108,898
snRNA 11,381 12,387 11,513 11,055 14,467 12,857 18,941 19,080 15,470
rRNA 19,666 24,792 28,487 25,276 26,243 28,507 28,403 25,919 29,887
tRNA 388,179 239,575 150,429 278,754 457,630 452,977 337,384 597,214 700,422
tRNA matches tRF-5 362,050 212,503 122,029 249,710 423,795 420,596 304,148 548,458 647,353
t-RF-3 319 302 579 511 487 580 427 553 571
non-tRF 25,810 26,770 27,821 28,524 33,384 31,801 32,809 48,203 52,498
  1. The read numbers are summarized and tabulated. Sequences matching tRNAs were further sorted into tRF-5, -3, and non-tRFs, as defined in the text. Mouse genome (GRCm38/mm10) indicates Mus musculus genome assembled by the Genome Reference Consortium (GRCm38), UCSC version 10.
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BMC Infectious Diseases

ISSN: 1471-2334

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