Predicted CD4+ T- cell epitopes (15 a. a) (epitope position)
|
% of predicted epitope conservancy in seasonal H1N1(1977–2009) HA proteins
|
% seasonal H1N1(1977–2009) isolates with each of the conserved epitope
|
% A(H1N1)pdm09 (2009–2010) isolates with each of the conserved epitope
|
---|
VLEKNVTVTHSVNLL
|
100
|
100
|
99
|
(HA1 19–33)
| | | |
EELREQLSSVSSFER
|
100
|
100
|
99
|
(HA1 99–113)
| | | |
QLSSVSSFERFEIFP
|
100
|
100
|
99
|
(104–119)
| | | |
ATGLRNIPSIQSRGL
|
93
|
97
|
98
|
(HA1 315–329)
| | | |
GLRNIPSIQSRGLFG
|
100
|
97
|
100
|
(HA1 317–331)
| | | |
RNIPSIQSRGLFGAI
|
100
|
97
|
98
|
(HA1 319–333)
| | | |
QSRGLFGAIAGFIEG
|
100
|
100
|
100
|
(HA1 325–339)
| | | |
NKVNSVIEKMNTQFT
|
100
|
96
|
99
|
(HA2 377–391)
| | | |
VIEKMNTQFTAVGKE
|
100
|
96
|
99
|
(HA2 382–396)
| | | |
DGFLDIWTYNAELLV
|
100
|
96
|
99
|
(HA2 413–427)
| | | |
WTYNAELLVLLENER
|
100
|
99
|
100
|
(HA2 419–433)
| | | |
TYNAELLVLLENERT
|
100
|
99
|
100
|
(HA2 420–434)
| | | |
YNAELLVLLENERTL
|
100
|
100
|
100
|
(HA2 421–435)
| | | |
LVLLENERTLDYHDS
|
100
|
98
|
100
|
(HA2 426–440)
| | | |
I
YQILAIYSTVASSL
|
93
|
100
|
100
|
(HA2 510–524)
| | | |
YQILAIYSTVASSLV
|
100
|
100
|
100
|
(HA2 511–525)
| | | |
STVASSLVL
L
VSLGA
|
93
|
100
|
98
|
(HA2 518–532)
| | | |
GAISFWMCSNGSLQC
|
100
|
98
|
99
|
(HA2 531–545)
| | | |
- Bold faced epitopes were used in in vitro assays.