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Table 1 Fragments obtained during AFLP analysis using six primer combinations in V. cholerae.

From: Amplified fragment length polymorphism of clinical and environmental Vibrio cholerae from a freshwater environment in a cholera-endemic area, India

Pair No

Primersa

No. of fragments analyzed

Dg

  

Total bandsb

Monomorphicc

Polymorphicd

Informativee

Singularf

 

1.

G/G

29

3

26

25

1

0.99

2.

C/T

68

3

65

59

6

0.98

3.

C/G

64

6

58

54

4

0.99

4.

G/T

69

1

68

68

0

0.99

5.

T/A

43

1

42

38

4

0.98

6.

G/A

45

5

40

38

2

0.99

Total

 

318

19

299

282

17

0.99

  1. a Denoting EcoRI and MseI primers, each with one selective base (EcoRI-MseI +1/+1). The letters such as G/G, indicate selective bases respectively for EcoRI and MseI.
  2. b Bands scored excluding some small and large fragments at the ends of the gel.
  3. c Monomorphic refers to fragments present in all isolates.
  4. d Fragments showing variation in their patterns among all isolates.
  5. e Fragments present or absent in two or more isolates.
  6. f Fragment present or absent only in one isolate.
  7. g D-Simpson's index of diversity.