Target locus | Primer name | Primer sequence | Locationa | Size (bp) | Ref. No. |
---|---|---|---|---|---|
MTCD-MPCR | Â | Â | Â | Â | |
cfp32 | Rv0577F | 5' ATGCCCAAGAGAAGCGAATACAGGCAA | 671166-192 | 786 | [3] |
 | Rv0577R | 5' CTATTGCTGCGGTGCGGGCTTCAA | 671951-928 |  |  |
RD9 | Rv2073cF | 5' TCGCCGCTGCCAGATGAGTC | 2330579-598 | 600 | [3] |
 | Rv2073cR | 5' TTTGGGAGCCGCCGGTGGTGATGA | 2331173-150 |  |  |
RD12 | Rv3120F | 5' GTCGGCGATAGACCATGAGTCCGTCTCCAT | 3485558-587 | 404 | [3] |
 | Rv3120R (390-369) | 5' GCGAAAAGTGGGCGGATGCCAG | 3485961-940 |  |  |
Additional PCRs or sequencings | Â | Â | Â | ||
cfp32 | 3'cfp32F | 5' CGAATCATTGGCACGTCTACTTTG | 671770-793 | 372 | [2] |
 | 3'cfp32R | 5' GTGGCACCGGCGGCACCGCACACCT | 672141-117 |  |  |
RD12 | Rv3120-F (90-110) | 5' GGTATTTGCGCCCATATCCTG | 3485661-681 | 411 | this study |
 | Rv3120-R (500-481) | 5' CCTGGCTTCAAGCACCATTC | 3486071-052 |  |  |
rpoB | rpoB-Fb | 5' CAGGACGTGGAGGCGATCAC | 761007-026 | 250 | [18] |
 | rpoB-R | 5' CAGGGGTTTCGATCGGGCAC | 761256-237 |  |  |
rpoB c | rpoB-S-Fb | 5' GCGTACGGTCGGCGAGCTGATCC | 760922-944 | 418 | this study |
 | rpoB-S-R | 5' GCGGTACGGCGTTTCGATGAACC | 761339-317 |  |  |
rrs | Bact-rrs-Fb | 5' AGAGTTTGATCCTGGCTCAG | 1471856-875 | 1496 | this study |
 | Bact-rrs-R | 5' TACGGCTACCTTGTTACGAC | 1473351-332 |  |  |
rrs c | rrs-S-Fb | 5' ATACCTTTGGCTCCCTTTTCC | 1471809-829 | 1607 | this study |
 | rrs-S-R | 5' CCCACCAGTTGGGGCGTTTTC | 1473415-395 |  |  |
hsp65 | hsp65Fb | 5' ACCAACGATGGTGTGTCCAT | 528752-771 | 441 | [2] |
 | hsp65R | 5' CTTGTCGAACCGCATACCCT | 529192-173 |  |  |
gyrB | gyrBFb | 5' ACATCAACCGCACCAAGAACGC | 6027-048 | 483 | this study |
 | gyrBR | 5' GTGCCTTACGTGCCGCGATACG | 6509-488 |  |  |